One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/07/compare-matrices_2019-07-07.131100_saEoyp/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/07/compare-matrices_2019-07-07.131100_saEoyp/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_5-8nt_m1_shift7 ; 13 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_5-8nt_m1_shift7 (oligos_5-8nt_m1)                         
; oligos_5-8nt_m1; m=0 (reference); ncol1=15; shift=7; ncol=22; -------wwwtgGCGGGAAaaa
; Alignment reference
a	0	0	0	0	0	0	0	30	23	20	10	11	2	6	0	3	2	67	67	42	29	27
c	0	0	0	0	0	0	0	10	17	11	9	12	1	69	3	7	2	7	1	13	15	19
g	0	0	0	0	0	0	0	17	12	9	14	47	77	2	75	68	73	3	10	13	18	17
t	0	0	0	0	0	0	0	23	28	40	47	10	0	3	2	2	3	3	2	12	18	17
E2Fc_E2Fc_Athamap_rc_shift8 (E2Fc:E2Fc:Athamap_rc) 0.958 0.703 0.977 0.957 0.979 3 3 9 1 3 3.800 1 
; oligos_5-8nt_m1 versus E2Fc_E2Fc_Athamap_rc (E2Fc:E2Fc:Athamap_rc); m=1/12; ncol2=11; w=11; offset=1; strand=R; shift=8; score=    3.8; --------wwkgGCGGGAA---
; cor=0.958; Ncor=0.703; logoDP=0.977; NsEucl=0.957; NSW=0.979; rcor=3; rNcor=3; rlogoDP=9; rNsEucl=1; rNSW=3; rank_mean=3.800; match_rank=1
a	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	0	0	4	4	0	0	0
c	0	0	0	0	0	0	0	0	0	0	0	1	0	5	0	1	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	2	3	5	0	5	4	5	0	0	0	0	0
t	0	0	0	0	0	0	0	0	3	3	3	0	0	0	0	0	0	1	1	0	0	0
DEL1.ampDAP_M0365_AthalianaCistrome_shift6 (DEL1.ampDAP:M0365:AthalianaCistrome) 0.898 0.786 8.451 0.924 0.920 6 1 2 6 8 4.600 3 
; oligos_5-8nt_m1 versus DEL1.ampDAP_M0365_AthalianaCistrome (DEL1.ampDAP:M0365:AthalianaCistrome); m=3/12; ncol2=15; w=14; offset=-1; strand=D; shift=6; score=    4.6; ------tTTTTGGCGGGAAAA-
; cor=0.898; Ncor=0.786; logoDP=8.451; NsEucl=0.924; NSW=0.920; rcor=6; rNcor=1; rlogoDP=2; rNsEucl=6; rNSW=8; rank_mean=4.600; match_rank=3
a	0	0	0	0	0	0	136	64	16	9	10	5	2	1	0	0	10	581	584	541	419	0
c	0	0	0	0	0	0	6	2	0	0	1	4	0	583	0	11	3	0	0	5	33	0
g	0	0	0	0	0	0	125	12	0	1	3	571	582	0	583	572	569	3	0	9	16	0
t	0	0	0	0	0	0	317	506	568	574	570	4	0	0	1	1	2	0	0	29	116	0
DEL2.ampDAP_M0366_AthalianaCistrome_shift6 (DEL2.ampDAP:M0366:AthalianaCistrome) 0.898 0.786 8.559 0.923 0.918 7 2 1 7 9 5.200 6 
; oligos_5-8nt_m1 versus DEL2.ampDAP_M0366_AthalianaCistrome (DEL2.ampDAP:M0366:AthalianaCistrome); m=6/12; ncol2=15; w=14; offset=-1; strand=D; shift=6; score=    5.2; ------tTTTTGGCGGGAAAA-
; cor=0.898; Ncor=0.786; logoDP=8.559; NsEucl=0.923; NSW=0.918; rcor=7; rNcor=2; rlogoDP=1; rNsEucl=7; rNSW=9; rank_mean=5.200; match_rank=6
a	0	0	0	0	0	0	114	57	26	20	8	3	0	1	1	1	0	545	549	526	425	0
c	0	0	0	0	0	0	5	1	2	0	1	2	0	548	0	8	6	0	0	7	28	0
g	0	0	0	0	0	0	135	7	1	4	3	543	549	0	547	540	542	4	0	6	12	0
t	0	0	0	0	0	0	295	484	520	525	537	1	0	0	1	0	1	0	0	10	84	0
DEL1.DAP_M0367_AthalianaCistrome_rc_shift7 (DEL1.DAP:M0367:AthalianaCistrome_rc) 0.918 0.656 0.311 0.938 0.941 4 4 12 4 4 5.600 7 
; oligos_5-8nt_m1 versus DEL1.DAP_M0367_AthalianaCistrome_rc (DEL1.DAP:M0367:AthalianaCistrome_rc); m=7/12; ncol2=21; w=15; offset=0; strand=R; shift=7; score=    5.6; -------TTTTGGCGGGAAAww
; cor=0.918; Ncor=0.656; logoDP=0.311; NsEucl=0.938; NSW=0.941; rcor=4; rNcor=4; rlogoDP=12; rNsEucl=4; rNSW=4; rank_mean=5.600; match_rank=7
a	0	0	0	0	0	0	0	75	44	25	12	1	0	0	0	0	0	325	324	279	203	87
c	0	0	0	0	0	0	0	0	2	4	0	16	1	326	0	3	3	0	1	10	22	36
g	0	0	0	0	0	0	0	5	1	3	11	308	324	0	326	323	323	0	0	13	15	21
t	0	0	0	0	0	0	0	246	279	294	303	1	1	0	0	0	0	1	1	24	86	182